| Dokumenttyp | Erscheinungsjahr | Titel | Autoren | Herausgeber |
|---|
| article | 2023 | PanPA: generation and alignment of panproteome graphs | Dabbaghie, Fawaz; Srikakulam, Sanjay K.; Marschall, Tobias; Kalinina, Olga V. | |
| article | 2019 | Bit-parallel sequence-to-graph alignment | Rautiainen, Mikko; Mäkinen, Veli; Marschall, Tobias | |
| article | 2019 | Haplotype-aware diplotyping from noisy long reads | Ebler, Jana; Haukness, Marina; Pesout, Trevor; Marschall, Tobias; Paten, Benedict | |
| article | 2019 | Fully-sensitive seed finding in sequence graphs using a hybrid index | Ghaffaari, Ali; Marschall, Tobias | |
| article | 2019 | Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome | Wenger, Aaron M.; Peluso, Paul; Rowell, William J.; Chang, Pi-Chuan; Hall, Richard J.; Concepcion, Gregory T.; Ebler, Jana; Fungtammasan, Arkarachai; Kolesnikov, Alexey; Olson, Nathan D.; Töpfer, Armin; Alonge, Michael; Mahmoud, Medhat; Qian, Yufeng; Chin, Chen-Shan; Phillippy, Adam M.; Schatz, Michael C.; Myers, Gene; DePristo, Mark A.; Ruan, Jue; Marschall, Tobias; Sedlazeck, Fritz J.; Zook, Justin M.; Li, Heng; Koren, Sergey; Carroll, Andrew; Rank, David R.; Hunkapiller, Michael W. | |
| article | 2019 | Multi-platform discovery of haplotype-resolved structural variation in human genomes | Chaisson, Mark J. P.; Sanders, Ashley D.; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J.; Rodriguez, Oscar L.; Guo, Li; Collins, Ryan L.; Fan, Xian; Wen, Jia; Handsaker, Robert E.; Fairley, Susan; Kronenberg, Zev N.; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M.; Hastie, Alex R.; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A.; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T.; Lambert, Christine C.; Church, Deanna M.; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U.; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T.; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M.; Navarro, Fabio C. P.; Nelson, Bradley J.; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W. C.; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stütz, Adrian; Spierings, Diana C. J.; Ward, Alistair; Welch, AnneMarie E.; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B.; Kwok, Pui-Yan; Lansdorp, Peter M.; Marth, Gabor T.; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E.; Talkowski, Michael E.; Mills, Ryan E.; Marschall, Tobias; Korbel, Jan O.; Eichler, Evan E.; Lee, Charles | |
| article | 2019 | Genotyping inversions and tandem duplications | Ebler, Jana; Schönhuth, Alexander; Marschall, Tobias | |
| article | 2019 | SNP and indel frequencies at transcription start sites and at canonical and alternative translation initiation sites in the human genome | Neininger, Kerstin; Marschall, Tobias; Helms, Volkhard | |
| bookPart | 2018 | Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data | Chakraborty, Shounak; Canzar, Stefan; Marschall, Tobias; Schulz, Marcel H. | |
| article | 2018 | Strand-seq enables reliable separation of long reads by chromosome via expectation maximization | Ghareghani, Maryam; Porubskỳ, David; Sanders, Ashley D.; Meiers, Sascha; Eichler, Evan E.; Korbel, Jan O.; Marschall, Tobias | |
| article | 2018 | A graph-based approach to diploid genome assembly | Garg, Shilpa; Rautiainen, Mikko; Novak, Adam M.; Garrison, Erik; Durbin, Richard; Marschall, Tobias | |
| article | 2018 | Computational pan-genomics: status, promises and challenges | Marschall, Tobias; Marz, M.; Abeel, T.; Dijkstra, L.; Dutilh, B. E.; Ghaffaari, P.; Kersey, P.; Kloosterman, W. P.; Mäkinen, V.; Novak, A. M.; Paten, B.; Porubsky, D.; Rivals, E.; Alkan, C.; Baaijens, J.; de Bakker, P. I. W.; Boeva, V.; Bonnal, R. J. P.; Chiaromonte, F.; Chikhi, R.; Ciccarelli, F. D.; Cijvat, R.; Datema, E.; Duijn, C. M. V.; Eichler, E. E.; Ernst, C.; Eskin, E.; Garrison, E.; El-Kebir, M.; Klau, G. W.; Korbel, J. O.; Lameijer, E.; Langmead, B.; Martin, M.; Medvedev, P.; Mu, J. C.; Neerincx, P.; Ouwens, K.; Peterlongo, P.; Pisanti, N.; Rahmann, S.; Raphael, B.; Reinert, K.; de Ridder, D.; de Ridder, J.; Schlesner, M.; Schulz-Trieglaff, O.; Sanders, A.; Sheikhizadeh, S.; Shneider, C.; Smit, S.; Valenzuela, V.; Wang, J.; Wessels, L.; Zhang, Y.; Guryev, V.; Vandin, F.; Ye, K.; Schönhuth, A. | |
| conferenceObjectPart | 2017 | A Guided Tour to Computational Haplotyping | Klau, Gunnar W.; Marschall, Tobias | |
| article | 2017 | Mapping and phasing of structural variation in patient genomes using nanopore sequencing | Cretu Stancu, Mircea; van Roosmalen, Markus J.; Renkens, Ivo; Nieboer, Marleen M.; Middelkamp, Sjors; de Ligt, Joep; Pregno, Giulia; Giachino, Daniela; Mandrile, Giorgia; Espejo Valle-Inclan, Jose; Korzelius, Jerome; de Bruijn, Ewart; Cuppen, Edwin; Talkowski, Michael E.; Marschall, Tobias; de Ridder, Jeroen; Kloosterman, Wigard P. | |
| article | 2017 | Dense and accurate whole-chromosome haplotyping of individual genomes | Porubsky, David; Garg, Shilpa; Sanders, Ashley D.; Korbel, Jan O.; Guryev, Victor; Lansdorp, Peter M.; Marschall, Tobias | |
https://orcid.org/0000-0002-9376-1030