Please use this identifier to cite or link to this item:
doi:10.22028/D291-42621
Title: | Multi-Level Protocol for Mechanistic Reaction Studies Using Semi-Local Fitted Potential Energy Surfaces |
Author(s): | Piskor, Tomislav Pinski, Peter Mast, Thilo Rybkin, Vladimir |
Language: | English |
Title: | International Journal of Molecular Sciences |
Volume: | 25 |
Issue: | 15 |
Publisher/Platform: | MDPI |
Year of Publication: | 2024 |
Free key words: | potential energy surface transition state reaction mechanism |
DDC notations: | 500 Science |
Publikation type: | Journal Article |
Abstract: | In this work, we propose a multi-level protocol for routine theoretical studies of chemical reaction mechanisms. The initial reaction paths of our investigated systems are sampled using the Nudged Elastic Band (NEB) method driven by a cheap electronic structure method. Forces recalculated at the more accurate electronic structure theory for a set of points on the path are fitted with a machine learning technique (in our case symmetric gradient domain machine learning or sGDML) to produce a semi-local reactive potential energy surface (PES), embracing reactants, products and transition state (TS) regions. This approach has been successfully applied to a unimolecular (Bergman cyclization of enediyne) and a bimolecular (SN2 substitution) reaction. In particular, we demonstrate that with only 50 to 150 energy-force evaluations with the accurate reference methods (here completeactive-space self-consistent field, CASSCF, and coupled-cluster singles and doubles, CCSD) it is possible to construct a semi-local PES giving qualitative agreement for stationary-point geometries, intrinsic reaction coordinates and barriers. Furthermore, we find a qualitative agreement in vibrational frequencies and reaction rate coefficients. The key aspect of the method’s performance is its multi-level nature, which not only saves computational effort but also allows extracting meaningful information along the reaction path, characterized by zero gradients in all but one direction. Agnostic to the nature of the TS and computationally economic, the protocol can be readily automated and routinely used for mechanistic reaction studies. |
DOI of the first publication: | 10.3390/ijms25158530 |
URL of the first publication: | https://doi.org/10.3390/ijms25158530 |
Link to this record: | urn:nbn:de:bsz:291--ds-426210 hdl:20.500.11880/38262 http://dx.doi.org/10.22028/D291-42621 |
ISSN: | 1422-0067 |
Date of registration: | 13-Aug-2024 |
Description of the related object: | Supplementary Materials |
Related object: | https://www.mdpi.com/article/10.3390/ijms1010000/s1 |
Faculty: | NT - Naturwissenschaftlich- Technische Fakultät |
Department: | NT - Physik |
Professorship: | NT - Prof. Dr. Frank Wilhelm-Mauch |
Collections: | SciDok - Der Wissenschaftsserver der Universität des Saarlandes |
Files for this record:
File | Description | Size | Format | |
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ijms-25-08530.pdf | 1,35 MB | Adobe PDF | View/Open |
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