List of publications

DokumenttypErscheinungsjahrTitelAutorenHerausgeber
article2024Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics MycoplanecinsFu, Chengzhang; Liu, Yunkun; Walt, Christine; Rasheed, Sari; Bader, Chantal D.; Lukat, Peer; Neuber, Markus; Haeckl, F. P. Jake; Blankenfeldt, Wulf; Kalinina, Olga V.; Müller, Rolf
article2023Simulated Tempering-Enhanced Umbrella Sampling Improves Convergence of Free Energy Calculations of Drug Membrane PermeationSousa, Carla F.; Becker, Robert A.; Lehr, Claus-Michael; Kalinina, Olga V.; Hub, Jochen S.
article2023Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosisYurtseven, Alper; Buyanova, Sofia; Agrawal, Amay Ajaykumar; Bochkareva, Olga O.; Kalinina, Olga V.
article2023GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILESJoeres, Roman; Bojar, Daniel; Kalinina, Olga
article2023Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesisAdam, Sebastian; Zheng, Dazhong; Klein, Andreas; Volz, Carsten; Mullen, William; Shirran, Sally L.; Smith, Brian O.; Kalinina, Olga V.; Müller, Rolf; Koehnke, Jesko
article2023MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variantsSrikakulam, Sanjay K.; Keller, Sebastian; Dabbaghie, Fawaz; Bals, Robert; Kalinina, Olga V.
article2023PanPA: generation and alignment of panproteome graphsDabbaghie, Fawaz; Srikakulam, Sanjay K.; Marschall, Tobias; Kalinina, Olga V.
article2022d-StructMAn: Containerized structural annotation on the scale from genetic variants to whole proteomesGress, Alexander; Srikakulam, Sanjay K.; Keller, Sebastian; Ramensky, Vasily; Kalinina, Olga V.
article2020A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistanceSrikakulam, Sanjay K.; Bastys, Tomas; Kalinina, Olga
article2020DIGGER: exploring the functional role of alternative splicing in protein interactionsLouadi, Zakaria; Yuan, Kevin; Gress, Alexander; Tsoy, Olga; Kalinina, Olga V.; Baumbach, Jan; Kacprowski, Tim; List, Markus
article2020Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitorsBastys, Tomas; Gapsys, Vytautas; Walter, Hauke; Heger, Eva; Doncheva, Nadezhda T.; Kaiser, Rolf; de Groot, Bert L.; Kalinina, Olga V.
article2020SphereCon-a method for precise estimation of residue relative solvent accessible area from limited structural informationGress, Alexander; Kalinina, Olga V.
article2019Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational ChangesAhmad, Mazen; Helms, Volkhard; Kalinina, Olga V.; Lengauer, Thomas
Welcome
ORCID: iD icon https://orcid.org/0000-0002-9445-477X
Name:Kalinina, Olga
Faculty: M - Medizinische Fakultät
Department: M - Medizinische Biometrie, Epidemiologie und medizinische Informatik
Professorship:M - Prof. Dr. Olga Kalinina
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